cambionome

2020-09-10 15:23:20 +02:00
parent 6f634c6a09
commit cf8c4893ff
62 changed files with 33849 additions and 7243 deletions
--- a/SPEx/poetry.lock
+++ b/SPEx/poetry.lock
@@ -1,3 +1,16 @@
+[[package]]
+category = "dev"
+description = "An abstract syntax tree for Python with inference support."
+name = "astroid"
+optional = false
+python-versions = ">=3.5"
+version = "2.4.2"
+
+[package.dependencies]
+lazy-object-proxy = ">=1.4.0,<1.5.0"
+six = ">=1.12,<2.0"
+wrapt = ">=1.11,<2.0"
+
 [[package]]
 category = "dev"
 description = "Atomic file writes."
@@ -30,6 +43,35 @@ optional = false
 python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*"
 version = "0.4.3"

+[[package]]
+category = "dev"
+description = "A Python utility / library to sort Python imports."
+name = "isort"
+optional = false
+python-versions = ">=3.6,<4.0"
+version = "5.5.2"
+
+[package.extras]
+colors = ["colorama (>=0.4.3,<0.5.0)"]
+pipfile_deprecated_finder = ["pipreqs", "requirementslib"]
+requirements_deprecated_finder = ["pipreqs", "pip-api"]
+
+[[package]]
+category = "dev"
+description = "A fast and thorough lazy object proxy."
+name = "lazy-object-proxy"
+optional = false
+python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*"
+version = "1.4.3"
+
+[[package]]
+category = "dev"
+description = "McCabe checker, plugin for flake8"
+name = "mccabe"
+optional = false
+python-versions = "*"
+version = "0.6.1"
+
 [[package]]
 category = "dev"
 description = "More routines for operating on iterables, beyond itertools"
@@ -69,6 +111,21 @@ optional = false
 python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*"
 version = "1.9.0"

+[[package]]
+category = "dev"
+description = "python code static checker"
+name = "pylint"
+optional = false
+python-versions = ">=3.5.*"
+version = "2.6.0"
+
+[package.dependencies]
+astroid = ">=2.4.0,<=2.5"
+colorama = "*"
+isort = ">=4.2.5,<6"
+mccabe = ">=0.6,<0.7"
+toml = ">=0.7.1"
+
 [[package]]
 category = "dev"
 description = "Python parsing module"
@@ -148,6 +205,14 @@ optional = false
 python-versions = "*"
 version = "1.3"

+[[package]]
+category = "dev"
+description = "Python Library for Tom's Obvious, Minimal Language"
+name = "toml"
+optional = false
+python-versions = "*"
+version = "0.10.1"
+
 [[package]]
 category = "dev"
 description = "Measures the displayed width of unicode strings in a terminal"
@@ -156,12 +221,24 @@ optional = false
 python-versions = "*"
 version = "0.2.5"

+[[package]]
+category = "dev"
+description = "Module for decorators, wrappers and monkey patching."
+name = "wrapt"
+optional = false
+python-versions = "*"
+version = "1.12.1"
+
 [metadata]
-content-hash = "1c42e1960727ac5a409ea7b368ea4580ab58aee6defc466c05f11ca75d4c511b"
+content-hash = "391a856937ccd31893cc680e0393cf0b980ab89f25c0cf9b46620994d66ab9bf"
 lock-version = "1.0"
 python-versions = "^3.8"

 [metadata.files]
+astroid = [
+    {file = "astroid-2.4.2-py3-none-any.whl", hash = "sha256:bc58d83eb610252fd8de6363e39d4f1d0619c894b0ed24603b881c02e64c7386"},
+    {file = "astroid-2.4.2.tar.gz", hash = "sha256:2f4078c2a41bf377eea06d71c9d2ba4eb8f6b1af2135bec27bbbb7d8f12bb703"},
+]
 atomicwrites = [
    {file = "atomicwrites-1.4.0-py2.py3-none-any.whl", hash = "sha256:6d1784dea7c0c8d4a5172b6c620f40b6e4cbfdf96d783691f2e1302a7b88e197"},
    {file = "atomicwrites-1.4.0.tar.gz", hash = "sha256:ae70396ad1a434f9c7046fd2dd196fc04b12f9e91ffb859164193be8b6168a7a"},
@@ -174,6 +251,37 @@ colorama = [
    {file = "colorama-0.4.3-py2.py3-none-any.whl", hash = "sha256:7d73d2a99753107a36ac6b455ee49046802e59d9d076ef8e47b61499fa29afff"},
    {file = "colorama-0.4.3.tar.gz", hash = "sha256:e96da0d330793e2cb9485e9ddfd918d456036c7149416295932478192f4436a1"},
 ]
+isort = [
+    {file = "isort-5.5.2-py3-none-any.whl", hash = "sha256:ba91218eee31f1e300ecc079ef0c524cea3fc41bfbb979cbdf5fd3a889e3cfed"},
+    {file = "isort-5.5.2.tar.gz", hash = "sha256:171c5f365791073426b5ed3a156c2081a47f88c329161fd28228ff2da4c97ddb"},
+]
+lazy-object-proxy = [
+    {file = "lazy-object-proxy-1.4.3.tar.gz", hash = "sha256:f3900e8a5de27447acbf900b4750b0ddfd7ec1ea7fbaf11dfa911141bc522af0"},
+    {file = "lazy_object_proxy-1.4.3-cp27-cp27m-macosx_10_13_x86_64.whl", hash = "sha256:a2238e9d1bb71a56cd710611a1614d1194dc10a175c1e08d75e1a7bcc250d442"},
+    {file = "lazy_object_proxy-1.4.3-cp27-cp27m-win32.whl", hash = "sha256:efa1909120ce98bbb3777e8b6f92237f5d5c8ea6758efea36a473e1d38f7d3e4"},
+    {file = "lazy_object_proxy-1.4.3-cp27-cp27m-win_amd64.whl", hash = "sha256:4677f594e474c91da97f489fea5b7daa17b5517190899cf213697e48d3902f5a"},
+    {file = "lazy_object_proxy-1.4.3-cp27-cp27mu-manylinux1_x86_64.whl", hash = "sha256:0c4b206227a8097f05c4dbdd323c50edf81f15db3b8dc064d08c62d37e1a504d"},
+    {file = "lazy_object_proxy-1.4.3-cp34-cp34m-manylinux1_x86_64.whl", hash = "sha256:d945239a5639b3ff35b70a88c5f2f491913eb94871780ebfabb2568bd58afc5a"},
+    {file = "lazy_object_proxy-1.4.3-cp34-cp34m-win32.whl", hash = "sha256:9651375199045a358eb6741df3e02a651e0330be090b3bc79f6d0de31a80ec3e"},
+    {file = "lazy_object_proxy-1.4.3-cp34-cp34m-win_amd64.whl", hash = "sha256:eba7011090323c1dadf18b3b689845fd96a61ba0a1dfbd7f24b921398affc357"},
+    {file = "lazy_object_proxy-1.4.3-cp35-cp35m-manylinux1_x86_64.whl", hash = "sha256:48dab84ebd4831077b150572aec802f303117c8cc5c871e182447281ebf3ac50"},
+    {file = "lazy_object_proxy-1.4.3-cp35-cp35m-win32.whl", hash = "sha256:ca0a928a3ddbc5725be2dd1cf895ec0a254798915fb3a36af0964a0a4149e3db"},
+    {file = "lazy_object_proxy-1.4.3-cp35-cp35m-win_amd64.whl", hash = "sha256:194d092e6f246b906e8f70884e620e459fc54db3259e60cf69a4d66c3fda3449"},
+    {file = "lazy_object_proxy-1.4.3-cp36-cp36m-manylinux1_x86_64.whl", hash = "sha256:97bb5884f6f1cdce0099f86b907aa41c970c3c672ac8b9c8352789e103cf3156"},
+    {file = "lazy_object_proxy-1.4.3-cp36-cp36m-win32.whl", hash = "sha256:cb2c7c57005a6804ab66f106ceb8482da55f5314b7fcb06551db1edae4ad1531"},
+    {file = "lazy_object_proxy-1.4.3-cp36-cp36m-win_amd64.whl", hash = "sha256:8d859b89baf8ef7f8bc6b00aa20316483d67f0b1cbf422f5b4dc56701c8f2ffb"},
+    {file = "lazy_object_proxy-1.4.3-cp37-cp37m-macosx_10_13_x86_64.whl", hash = "sha256:1be7e4c9f96948003609aa6c974ae59830a6baecc5376c25c92d7d697e684c08"},
+    {file = "lazy_object_proxy-1.4.3-cp37-cp37m-manylinux1_x86_64.whl", hash = "sha256:d74bb8693bf9cf75ac3b47a54d716bbb1a92648d5f781fc799347cfc95952383"},
+    {file = "lazy_object_proxy-1.4.3-cp37-cp37m-win32.whl", hash = "sha256:9b15f3f4c0f35727d3a0fba4b770b3c4ebbb1fa907dbcc046a1d2799f3edd142"},
+    {file = "lazy_object_proxy-1.4.3-cp37-cp37m-win_amd64.whl", hash = "sha256:9254f4358b9b541e3441b007a0ea0764b9d056afdeafc1a5569eee1cc6c1b9ea"},
+    {file = "lazy_object_proxy-1.4.3-cp38-cp38-manylinux1_x86_64.whl", hash = "sha256:a6ae12d08c0bf9909ce12385803a543bfe99b95fe01e752536a60af2b7797c62"},
+    {file = "lazy_object_proxy-1.4.3-cp38-cp38-win32.whl", hash = "sha256:5541cada25cd173702dbd99f8e22434105456314462326f06dba3e180f203dfd"},
+    {file = "lazy_object_proxy-1.4.3-cp38-cp38-win_amd64.whl", hash = "sha256:59f79fef100b09564bc2df42ea2d8d21a64fdcda64979c0fa3db7bdaabaf6239"},
+]
+mccabe = [
+    {file = "mccabe-0.6.1-py2.py3-none-any.whl", hash = "sha256:ab8a6258860da4b6677da4bd2fe5dc2c659cff31b3ee4f7f5d64e79735b80d42"},
+    {file = "mccabe-0.6.1.tar.gz", hash = "sha256:dd8d182285a0fe56bace7f45b5e7d1a6ebcbf524e8f3bd87eb0f125271b8831f"},
+]
 more-itertools = [
    {file = "more-itertools-8.5.0.tar.gz", hash = "sha256:6f83822ae94818eae2612063a5101a7311e68ae8002005b5e05f03fd74a86a20"},
    {file = "more_itertools-8.5.0-py3-none-any.whl", hash = "sha256:9b30f12df9393f0d28af9210ff8efe48d10c94f73e5daf886f10c4b0b0b4f03c"},
@@ -190,6 +298,10 @@ py = [
    {file = "py-1.9.0-py2.py3-none-any.whl", hash = "sha256:366389d1db726cd2fcfc79732e75410e5fe4d31db13692115529d34069a043c2"},
    {file = "py-1.9.0.tar.gz", hash = "sha256:9ca6883ce56b4e8da7e79ac18787889fa5206c79dcc67fb065376cd2fe03f342"},
 ]
+pylint = [
+    {file = "pylint-2.6.0-py3-none-any.whl", hash = "sha256:bfe68f020f8a0fece830a22dd4d5dddb4ecc6137db04face4c3420a46a52239f"},
+    {file = "pylint-2.6.0.tar.gz", hash = "sha256:bb4a908c9dadbc3aac18860550e870f58e1a02c9f2c204fdf5693d73be061210"},
+]
 pyparsing = [
    {file = "pyparsing-2.4.7-py2.py3-none-any.whl", hash = "sha256:ef9d7589ef3c200abe66653d3f1ab1033c3c419ae9b9bdb1240a85b024efc88b"},
    {file = "pyparsing-2.4.7.tar.gz", hash = "sha256:c203ec8783bf771a155b207279b9bccb8dea02d8f0c9e5f8ead507bc3246ecc1"},
@@ -239,7 +351,14 @@ text-unidecode = [
    {file = "text-unidecode-1.3.tar.gz", hash = "sha256:bad6603bb14d279193107714b288be206cac565dfa49aa5b105294dd5c4aab93"},
    {file = "text_unidecode-1.3-py2.py3-none-any.whl", hash = "sha256:1311f10e8b895935241623731c2ba64f4c455287888b18189350b67134a822e8"},
 ]
+toml = [
+    {file = "toml-0.10.1-py2.py3-none-any.whl", hash = "sha256:bda89d5935c2eac546d648028b9901107a595863cb36bae0c73ac804a9b4ce88"},
+    {file = "toml-0.10.1.tar.gz", hash = "sha256:926b612be1e5ce0634a2ca03470f95169cf16f939018233a670519cb4ac58b0f"},
+]
 wcwidth = [
    {file = "wcwidth-0.2.5-py2.py3-none-any.whl", hash = "sha256:beb4802a9cebb9144e99086eff703a642a13d6a0052920003a230f3294bbe784"},
    {file = "wcwidth-0.2.5.tar.gz", hash = "sha256:c4d647b99872929fdb7bdcaa4fbe7f01413ed3d98077df798530e5b04f116c83"},
 ]
+wrapt = [
+    {file = "wrapt-1.12.1.tar.gz", hash = "sha256:b62ffa81fb85f4332a4f609cab4ac40709470da05643a082ec1eb88e6d9b97d7"},
+]